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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcag

Basic information

species Glycine max
transcript GLYMA13G22190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 3
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtat--atttttcatgcttatagaaatgaaatttcgatttttga-----tattttggaaaggctattaggggcctacaattgtattgtgattttcag----
 ||  |  || |  | |||    | ||||| |  || |||||||||||||| ||||||||||| || | ||| || |||||||||||||  ||   | |  || ||| || ||    ||  || | | |     | ||||   | ||  || |   |  | |  ||   |  | |||    |    
GTTTACAACAGAGCAGGTTCGTAATCTTGATAGGAACAAGCAGTGGTCTAGAGCTCTTGATGGCTCCAATTATCTACCTGGAATGgtatgtatacgtgaaactaatacaa-tggttcttaaatgtataaatgattcttttcctagggacataacctgtttgctgttccctgttaattaagggaatt

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 3
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatat-ttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgta--ttgtgattttcag---------
 ||| ||    |  | |||  | | |||||||||||||||||||||||||| || |||||||| || | ||| || ||||||||||||| | |  | |   ||     || |    ||  ||  |   |  |||||     ||  |      |      | |   |||  || |||           
GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGgtatgtatccttaaaattgacacaaaggcccttatatgatc--ttgtttgggttacctgctgcacttccgttgctatgctttggaatcttccttagccaatt

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcag
 ||   |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||    ||||    | ||   | |  |  ||  | ||   || | |   ||||| ||      || |  || | | | |          
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaatt--aatgtctcctaaaggtta-----agcttgtaaatatgtag----------

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcag
 ||   |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||    ||||    | ||   | |  |  ||  | ||    | | |   || || |       || |  || | | | |          
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatctttaaattaatttgtctcctaacggtt-----tagcttgtaaatatgtag----------