Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgacacttaacatttttttattccacatatatcttgattatacatttcatccggagttgattttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGC

Basic information

species Glycine max
transcript GLYMA12G08860.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208301669|gb|GE096953.1|GE096953
EST:     TGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAG                         TTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
genomic: TGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGgtttgacact ... ttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
EST: gi|208273175|gb|GE072757.1|GE072757
EST:     GTATGCAAGGTGTACTCGATCAGTCTCAATAG                         TTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
genomic: GTATGCAAGGTGTACTCGATCAGTCTCAATAGgtttgacact ... ttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
EST: gi|208106703|gb|GD906520.1|GD906520
EST:     AGGTGTACTCGATCAGTCTCAATAG                         TTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
genomic: AGGTGTACTCGATCAGTCTCAATAGgtttgacact ... ttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
EST: gi|208221868|gb|GE016890.1|GE016890
EST:     ACTCGATCAGTCTCAATAG                         TTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
genomic: ACTCGATCAGTCTCAATAGgtttgacact ... ttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACA
EST: gi|193412973|gb|FK381690.1|FK381690
EST:     GTATGCAAGGTGTACTCGATCAGTCTCAATAG                         TTCCACCTGTGTATTATGCACAT
genomic: GTATGCAAGGTGTACTCGATCAGTCTCAATAGgtttgacact ... ttgtttgcagTTCCACCTGTGTATTATGCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattccacatatatcttgattatacatttcatccggagttgattttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGC
                                           ttttgttt  CT-rich tract
         atatatcttgattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgacacttaacatttttttattccacatatatcttgattatacatttcatccggagttgattttgtttgcagTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG