1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GTTACTTTTGTGGTGGTCCAAAAACGACACCACACAAGGTTATTTCCTGTAGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatctcttgtatttgtatttggcggtattgcatttcacacgtccacccctctctcctccttaaatttattgatttagtgtactttattgttaaag
species | Glycine max |
transcript | GLYMA12G08860.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CAGACAAATAAAAGTGGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|208340915|gb|GE134551.1|GE134551
genomic: CAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: AGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|193549736|gb|FK506451.1|FK506451
genomic: AGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: ATCATGGAAGTCATGATCAGACAAATAAAAAGTGGAAATAATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|208315629|gb|GE110541.1|GE110541
genomic: ATCATGGAAGTCATGATCAGACAAAT-AAAAGTGGAAAT-ATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: AGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|193550510|gb|FK508401.1|FK508401
genomic: AGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: CAGACAAATAAAAGTGG-AATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|193573872|gb|FK529246.1|FK529246
genomic: CAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: AAGTCATGATCTGACAAATAAAAGTAGGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAG-TTGA-TTTTACCEST: gi|193667796|gb|FK613954.1|FK613954
genomic: AAGTCATGATCAGACAAATAAAAGT-GGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: CAGACAAAT-AAAGTGG-AATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|193412973|gb|FK381690.1|FK381690
genomic: CAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: GGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCEST: gi|207713235|gb|GD694784.1|GD694784
genomic: GGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
EST: TGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAG GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
genomic: TGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatc ... attgttaaagGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTTTTGTGGTGGTCCAAAAACGACACCACACAAGGTTATTTCCTGTAGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGgtttttcatctcttgtatttgtatttggcggtattgcatttcacacgtccacccctctctcctccttaaatttattgatttagtgtactttattgttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA