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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctccttccacactgctgttttttgctattattattactctactactattatcaatctctagaaatatgtattttaatttttcag

Basic information

species Glycine max
transcript GLYMA12G08860.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667229|gb|FK611385.1|FK611385
EST:     AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGACTTATAC                         GTATGCAAGGTGTACTCGAT
genomic: AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGAT
EST: gi|208273175|gb|GE072757.1|GE072757
EST:     TGTTTACTAATAATTTGTGTTATAC                         GTATGCAAGGTGTACTCGATCAGTCTCAATAG
genomic: TGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGATCAGTCTCAATAG
EST: gi|193550510|gb|FK508401.1|FK508401
EST:     AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGACTTATAC                         GTATGCAAGGTGTACTCGAT
genomic: AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGAT
EST: gi|193667796|gb|FK613954.1|FK613954
EST:     AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGACTTATAC                         GTATGCAAGGTGTACTCGAT
genomic: AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGAT
EST: gi|193412973|gb|FK381690.1|FK381690
EST:     AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATAC                         GTATGCAAGGTGTACTCGATCAGTCTCAATAG
genomic: AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGATCAGTCTCAATAG
EST: gi|207713235|gb|GD694784.1|GD694784
EST:     AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATAC                         GTATGCAAGGTGTACTCGAAATCAGTCTCAA
genomic: AACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACgtaattctcc ... aatttttcagGTATGCAAGGTGTACTCGA--TCAGTCTCAA