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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagtactctaagatggattaacttcattatgctattttattgttccaagggcatttgacaggttctctattttgactgtactattttttttttcag

Basic information

species Glycine max
transcript GLYMA12G08860.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667229|gb|FK611385.1|FK611385
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
EST: gi|193549736|gb|FK506451.1|FK506451
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGAT
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGAT
EST: gi|208315629|gb|GE110541.1|GE110541
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
EST: gi|193550510|gb|FK508401.1|FK508401
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATACATGTGCTGTTCGATGAAAACAACTT
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTAT-CATGTGCTGTTCGATGAAAACAACTT
EST: gi|193573872|gb|FK529246.1|FK529246
EST:     GCCACCCTCGGGAG-TTGA-TTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
EST: gi|193667796|gb|FK613954.1|FK613954
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
EST: gi|193412973|gb|FK381690.1|FK381690
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
EST: gi|207713235|gb|GD694784.1|GD694784
EST:     GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAA                         GGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC
genomic: GCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagt ... tttttttcagGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAgtaatacagtactctaagatggattaacttcattatgctattttattgttccaagggcatttgacaggttctctattttgactgtactattttttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA