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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtccatttgtgctttcttttctcactggttttcttaaagcgggcaaaattttcctttctttttttgaatatttgatgttctttaatttaaaatctccagGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA

Basic information

species Glycine max
transcript GLYMA12G08820.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319564|gb|FK009546.1|FK009546
EST:     ATGTTTTCAACTATCTTGCAGGTGATTTTATGAGGCCAAGAATTAATGAG                         GTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
genomic: ATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGgtaagaagaa ... aaatctccagGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
EST: gi|192319565|gb|FK009547.1|FK009547
EST:     ATGTTTTCAACTATCTTGCAGGTGATTTTATGAGGCCAAGAATTAATGAG                         GTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
genomic: ATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGgtaagaagaa ... aaatctccagGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
EST: gi|151398851|gb|EV268722.1|EV268722
EST:     GCAGGTGATTTTATGAGACCAAGAATTAATGAG                         GTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
genomic: GCAGGTGATTTTATGAGACCAAGAATTAATGAGgtaagaagaa ... aaatctccagGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattttcctttctttttttgaatatttgatgttctttaatttaaaatctccagGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA
                                   ctttaat  putative branch site (score: 4)
                                                tctcc  putative PPT
          tttctttttttgaata  TA-rich tract