1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatttgtcggtcttgttttatccttcaagtttaatcaaatgattctcttaatttttgtgttttaatataggtaacatcacattctgtctgattattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA
species | Glycine max |
transcript | GLYMA12G08820.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA GTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAEST: gi|192319565|gb|FK009547.1|FK009547
genomic: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAgtaaggtccc ... attattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTA
EST: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA GTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAEST: gi|151398851|gb|EV268722.1|EV268722
genomic: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAgtaaggtccc ... attattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTA
EST: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA GTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAEST: gi|209697340|gb|BW675485.1|BW675485
genomic: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAgtaaggtccc ... attattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTA
EST: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAA GTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTA
genomic: TTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAgtaaggtccc ... attattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTA
tcttaatttttgtgttttaatataggtaacatcacattctgtctgattattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA
atttttgtgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgtcggtcttgttttatccttcaagtttaatcaaatgattctcttaatttttgtgttttaatataggtaacatcacattctgtctgattattacagGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC