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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttaattctttgacaagaaaaagtactctcaatttcaatgctaacgaatcaaacgttctcttaactacttgatgacagATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAG

Basic information

species Glycine max
transcript GLYMA12G08820.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319564|gb|FK009546.1|FK009546
EST:     CTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCAC                         ATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTAT
genomic: CTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACgtaagtcttt ... ttgatgacagATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTAT
EST: gi|192319565|gb|FK009547.1|FK009547
EST:     CTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCAC                         ATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTAT
genomic: CTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACgtaagtcttt ... ttgatgacagATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctcaatttcaatgctaacgaatcaaacgttctcttaactacttgatgacagATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAG
       aatttcaat  TA-rich tract