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...tactgtctcttaaagaaaaaaatcagatatgtgtctatgtttcagttcttttgtctcataaaactgcagtaacttttaatttgtttgcttattgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGACATTTGCATAGAAAAGGAAATAATGTTACTA
species | Glycine max |
transcript | GLYMA12G08820.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACAEST: gi|192319565|gb|FK009547.1|FK009547
genomic: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
EST: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACAEST: gi|193405423|gb|FK371400.1|FK371400
genomic: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
EST: GTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACAEST: gi|193421726|gb|FK388345.1|FK388345
genomic: GTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
EST: TCATAT-AAAACCTATACTTCTATTGGATCCTAACAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACAEST: gi|151398851|gb|EV268722.1|EV268722
genomic: TCATATAAAAACCTATACTTCTATTGGATCCT--CAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
EST: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACAEST: gi|209697340|gb|BW675485.1|BW675485
genomic: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
EST: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTT GTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
genomic: AGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTgtaagtacac ... attgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACA
ttcttttgtctcataaaactgcagtaacttttaatttgtttgcttattgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGACATTTGCATAGAAAAGGAAATAATGTTACTA
taacttttaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgtctcttaaagaaaaaaatcagatatgtgtctatgtttcagttcttttgtctcataaaactgcagtaacttttaatttgtttgcttattgctgcagGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGACATTTGCATAGAAAAGGAAATAATGTTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA