1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTAGCAGCAAAAGGATCACTGAACCTTCCACAGGAAAAAAACAATCGAAGAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgttgactctaacttgtttcttaaggctcttaaaactattcatcatactcttgcagctttcaacaatatatagactgaaaattgatttttactcaacag
species | Glycine max |
transcript | GLYMA12G08610.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGACTAAAATTGAAGAAA GEST: gi|23732229|gb|BU764272.1|BU764272
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacag-
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGACTAAAATTGAAGAAA GEST: gi|24206014|gb|BU965267.1|BU965267
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacag-
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAA GCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACAC
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacagGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGCAGCAAAAGGATCACTGAACCTTCCACAGGAAAAAAACAATCGAAGAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgttgactctaacttgtttcttaaggctcttaaaactattcatcatactcttgcagctttcaacaatatatagactgaaaattgatttttactcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA