1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taaagaaaacaagattgtttagtttttgggttgtttcagactaggaccaaattattggatacaattttcattgttgatatttgttcttcttgtaattcagGAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAATTCTACCAGCTCATGGAAATGAGTATGTTCTCAAGGGTTCTGAGCTCTTT
species | Glycine max |
transcript | GLYMA12G08610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAG GAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAATEST: gi|18848685|gb|BM567805.1|BM567805
genomic: GTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAGgtgagcatgt ... tgtaattcagGAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAAT
EST: GTGTTGAGAGGTAGAAGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAG GAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAAT
genomic: GTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAGgtgagcatgt ... tgtaattcagGAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAAT
accaaattattggatacaattttcattgttgatatttgttcttcttgtaattcagGAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAATTCTACCAGCTCATGGAAATGAGTATGTTCTCAAGGGTTCTGAGCTCTTT
tgttgat putative branch site (score: 4)
tatttgttcttctt CT-rich tract
atacaattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagaaaacaagattgtttagtttttgggttgtttcagactaggaccaaattattggatacaattttcattgttgatatttgttcttcttgtaattcagGAGCTACAAGAGTGGATTTGTGTGGCATGATCTGTGTGAAGATGATATAATTCTACCAGCTCATGGAAATGAGTATGTTCTCAAGGGTTCTGAGCTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- aagaaaa
- - - - - - - - - - - - - tgggttg
- - - - - - - - - - - - - - - - - - - - - - - ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat