1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttttgtaattggttttgattgacacctgatggggacatggtagttgtcacatctaggccaatgtttcttctgtaacaaagtcaacacacaaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGGACATTCAAAATGCATTCCTCGATCAATTAAGGCTTCATTGACCAAGCAT
species | Glycine max |
transcript | GLYMA12G08610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGGACATAATGTTCTGAAACGCTCTTCTTCCTACAATGATGAGAG GACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGGEST: gi|23732229|gb|BU764272.1|BU764272
genomic: GGAGATGGACATAATGTTCTGAAACGCTCTTCTTCCTACAATGATGAGAGgtatgttttg ... aaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGG
EST: TTCCTACAATGATGAGAG GACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGGEST: gi|24206014|gb|BU965267.1|BU965267
genomic: TTCCTACAATGATGAGAGgtatgttttg ... aaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGG
EST: GGAGATGGACATAATGTTCTGAAACGCTCTTCTTCCTACAATGATGAGAG GACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGG
genomic: GGAGATGGACATAATGTTCTGAAACGCTCTTCTTCCTACAATGATGAGAGgtatgttttg ... aaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGG
tgtcacatctaggccaatgtttcttctgtaacaaagtcaacacacaaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGGACATTCAAAATGCATTCCTCGATCAATTAAGGCTTCATTGACCAAGCAT
ctgtaac putative branch site (score: 3)
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtaattggttttgattgacacctgatggggacatggtagttgtcacatctaggccaatgtttcttctgtaacaaagtcaacacacaaatgtgcagGACATTTAAAGAACAGAAACAGCAAGAAGACAAAGAGGAATCATCCTCGGGACATTCAAAATGCATTCCTCGATCAATTAAGGCTTCATTGACCAAGCAT
- - - - - -ggttttg
- - - - - - - - - - tgacacc
- - - - - - - - - - - - - - gatgggg
- - - - - - - - - - - - - - - - - - - - - - -tgtcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacac