1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagattgaataatgggaagacaaacattttgcttttttcttacttgggtgggggaaggggtgttgtttttgttgttttcctttgtgatttgtggattttgaggggttgtttttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAG
species | Glycine max |
transcript | GLYMA12G08610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATTTCATGGAGGTCCCACTTTCTTCACCCGATGGACTATACTTGAGAG ATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGTEST: gi|16347053|gb|BI972648.1|BI972648
genomic: TCATTTCATGGAGGTCCCACTTTCTTCACCCGATGGACTATACTTGAGAGgtagattgaa ... ttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGT
EST: ACTATACTTGAGAG ATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGTEST: gi|18848685|gb|BM567805.1|BM567805
genomic: ACTATACTTGAGAGgtagattgaa ... ttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGT
EST: TCATTTCATGGAGGTCCCACTTTCTTCACCCGATGGACTATACTTGAGAG ATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAAGCATGGCTTCCTTGT
genomic: TCATTTCATGGAGGTCCCACTTTCTTCACCCGATGGACTATACTTGAGAGgtagattgaa ... ttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGT
ttttgttgttttcctttgtgatttgtggattttgaggggttgtttttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAG
ttgttttt CT-rich tract
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattgaataatgggaagacaaacattttgcttttttcttacttgggtgggggaaggggtgttgtttttgttgttttcctttgtgatttgtggattttgaggggttgtttttgtgtgcagATGTGATTGATAGACTTAATGTGTTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA