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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctatttaaatttttttaaaatcttttatttattaaatgcctattttgaagttgtgaaattatgtctagatctatgaaagccaaatactcaaatt...

Basic information

species Glycine max
transcript GLYMA12G08170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08170.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G27490.1 (Arabidopsis thaliana), 5'ss of exon 7
TGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctatttaaatttttttaaaatcttttatttattaaatgcctattttgaagttgtgaaattatgtctagatctatgaaagccaaatactcaaatt--------
  |  ||||||| ||||| ||||| || |||||||| ||||| ||||||||||| || || ||  | ||||| |||||| | || || || || |||||||| | ||| || ||   | | |    || || ||||    | || |  ||    ||     ||  | | |||   | | | |  |   |||| | |  ||        
ATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGgtatgcct-ttcaataatatctcttgtccttaatttgccga-tgacggtt--agagaca-aaaggtctttct---tttcttagtgttgaatattgatgttattcaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307494|gb|FK002026.1|FK002026
EST:     TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAG                         GGAATGCAGCTGTGTTTGG
genomic: TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctat ... ccacatgcagGGAATGCAGCTGTGTTTGG
EST: gi|51336057|gb|CO979923.1|CO979923
EST:     TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
genomic: TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
EST: gi|9204449|gb|BE330673.1|BE330673
EST:     TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
genomic: TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
EST: gi|51345215|gb|CO985948.1|CO985948
EST:     TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
genomic: TCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGgtttacctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG