1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtggctcttttatctcacaaatgtgtcatttagttaatttacctctctgaggtttgtttcttatggctttgttgtttttatgctctctgcctaatggggatattttgtttgtttttcttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGG
species | Glycine max |
transcript | GLYMA12G08170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGT ATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGEST: gi|298170559|gb|HO019183.1|HO019183
genomic: TCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggct ... cttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
EST: TCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGT ATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
genomic: TCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGTgtgagtggct ... cttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCG
ttgtttttatgctctctgcctaatggggatattttgtttgtttttcttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGG
tcttaat putative branch site (score: 3)
ttttgtttgtttttct CT-rich tract
atattttgtttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggctcttttatctcacaaatgtgtcatttagttaatttacctctctgaggtttgtttcttatggctttgttgtttttatgctctctgcctaatggggatattttgtttgtttttcttaatttagATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT