1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaggctaatgaccttttacctattatgactatcccataaattgttccttcatgatgtgattgctgctgaaagtctcattattattttctaatgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAA
species | Glycine max |
transcript | GLYMA12G08170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTG TCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATEST: gi|51336057|gb|CO979923.1|CO979923
genomic: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGgtatgaatct ... atgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAAT
EST: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTG TCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATEST: gi|9204449|gb|BE330673.1|BE330673
genomic: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGgtatgaatct ... atgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAAT
EST: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTG TCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATEST: gi|51345215|gb|CO985948.1|CO985948
genomic: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGgtatgaatct ... atgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAAT
EST: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTG TCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAAT
genomic: TTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGgtatgaatct ... atgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAAT
ccttcatgatgtgattgctgctgaaagtctcattattattttctaatgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAA
ttctaat putative branch site (score: 2)
tcattattattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggctaatgaccttttacctattatgactatcccataaattgttccttcatgatgtgattgctgctgaaagtctcattattattttctaatgattgcagTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- -gctaatg
- - - - - - - - - - - - - - ctatccc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc