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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgaaaggctatacttgtagcttttttctgttgtgttctgcatcttccatcttcatggctattggaagtagtcttttaatatattatatctcacgaagttagGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGAGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGATGTCTTTGCAT

Basic information

species Glycine max
transcript GLYMA12G08170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08170.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02660.t01 (Vitis vinifera), 3'ss of exon 3
gtatatgaaaggctatacttgtagcttttttctgttgtgttctgcatcttccatcttcatggctattggaagtagtcttttaatatattatatctcacgaagttagGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGAGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGATGTCTTTGCAT
   ||     | | || | | ||  |   || ||| |    || | |  |   | |  |||  | ||  |  |   | | |||||| | |  ||   |    |||||| ||||| ||||||| |||    |||||||||||||||||||||||||| || |||||| |||| |  |||||||||||||| |||||||| |||||||
--gtaaatttgacaat-catctaaatgaattttgtag----ctcctttctgtctgtaaatgcttttttaatctctacatctaatatttgaagtcctgctgttttagGGATCAGATCACAAAGGGTATTCCTCAATGCTTCATAAAGCTTTGGAGGGCGCCATAATAGTGGAGAGTTTCCCCAAGACAACGGTGGATGTTTTTGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307494|gb|FK002026.1|FK002026
EST:     TGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAG                         GGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGA
genomic: TGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAGgtatatgaaa ... acgaagttagGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGA
EST: gi|298170559|gb|HO019183.1|HO019183
EST:     TGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAG                         GGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGA
genomic: TGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAGgtatatgaaa ... acgaagttagGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcttcatggctattggaagtagtcttttaatatattatatctcacgaagttagGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGAGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGATGTCTTTGCAT
                                        atctcac  putative branch site (score: 3)
                  aagtagtcttttaata  TA-rich tract