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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taccaaagaaaaataatgatgttgaaagtttgttatggatgctgatatggatgctgatggtggtctaattaattttggtgaattgtttcatgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCA

Basic information

species Glycine max
transcript GLYMA12G08040.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820111|gb|BE555621.1|BE555621
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAACACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGATGGAGCAACAGTGGCTGCATGTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|11414144|gb|BF426155.1|BF426155
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|14125914|gb|BG790352.1|BG790352
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|22525415|gb|BU084226.1|BU084226
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGATCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|22521782|gb|BU080603.1|BU080603
EST:     TTTCGGAGCAGCTGTAATCTACAAC-AAGGACAAAATCTGGGATGACCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTAC
genomic: TTTCGGAGCAGCTGTAATCTACAACGAAG-ACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9820659|gb|BE556169.1|BE556169
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21888263|gb|BQ741476.1|BQ741476
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21888578|gb|BQ741791.1|BQ741791
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|15814999|gb|BI787274.1|BI787274
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|15337456|gb|BI498112.1|BI498112
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|33389744|gb|CA852951.1|CA852951
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGATTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|12773033|gb|BG237960.1|BG237960
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|6846982|gb|AW349272.1|AW349272
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|19934407|gb|BQ079437.1|BQ079437
EST:     TTTCGGAGCAGCTGTAATCTACAAC-AAGGACAAAATCTGGGATGACCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTAC
genomic: TTTCGGAGCAGCTGTAATCTACAACGAAG-ACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21888959|gb|BQ742172.1|BQ742172
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9565767|gb|BE475276.1|BE475276
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|7590386|gb|AW706140.1|AW706140
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAG
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9820836|gb|BE556346.1|BE556346
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAACAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21600337|gb|BQ610668.1|BQ610668
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|192301298|gb|FG988073.1|FG988073
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|8827656|gb|BE211386.1|BE211386
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|31305132|gb|CD390335.1|CD390335
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|10709781|gb|BF009505.1|BF009505
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|281501705|gb|GT917133.1|GT917133
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|7588334|gb|AW704132.1|AW704132
EST:     ATTTCGGAGCAACTGTAATCTACAACCAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|22521708|gb|BU080519.1|BU080519
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|5820239|gb|AI988445.1|AI988445
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|7640070|gb|AW734379.1|AW734379
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9564212|gb|BE473721.1|BE473721
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGGTGGAGCAGCAGTGGCTGCATTATAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21256331|gb|BQ453219.1|BQ453219
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGACT-CCCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGTATTTTA
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGA-TATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTA
EST: gi|20813648|gb|BQ298126.1|BQ298126
EST:     TTTCGGAGCAGCTGTAATCTACAAC-AAGGACAAAATCTGGGATGACCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTAC
genomic: TTTCGGAGCAGCTGTAATCTACAACGAAG-ACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9901148|gb|BE610116.1|BE610116
EST:     GGTTCNGAGCAGCTGTAATCTACAACCAAGACCAAATCTGGGATGATCAG                         TGGATATTCTTGGGT-GGACCAATTGGTTGGAACA-CAGTGGCTGCATTTT
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCT-GGGTTGGACCAATTG-TTGGAGCAGCAGTGGCTGCATTTT
EST: gi|21888166|gb|BQ741379.1|BQ741379
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|4294793|gb|AI442241.1|AI442241
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|192294608|gb|FG986457.1|FG986457
EST:     GTTTCGGAGCAGCTGTAATCTACA-CGA-GACAAA-TCTGGGATGATCAG                         TGGATATTCTGG-TTGGACC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACC
EST: gi|31462464|gb|CD404492.1|CD404492
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9819310|gb|BE554823.1|BE554823
EST:     TTTCGGAGCAGCTGTAATCTACAAC-AAGGACAAAATCTGGGATGACCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTAC
genomic: TTTCGGAGCAGCTGTAATCTACAACGAAG-ACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|15815072|gb|BI787347.1|BI787347
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21285484|gb|BQ473355.1|BQ473355
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21888262|gb|BQ741475.1|BQ741475
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|22524385|gb|BU083196.1|BU083196
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGATCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|208266277|gb|GE065466.1|GE065466
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTG
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTG
EST: gi|21888233|gb|BQ741446.1|BQ741446
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|21888638|gb|BQ741851.1|BQ741851
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|9819402|gb|BE554915.1|BE554915
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
EST: gi|17401313|gb|BM178095.1|BM178095
EST:     GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAG                         TGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC
genomic: GTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGgtaaacataa ... tgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggatgctgatggtggtctaattaattttggtgaattgtttcatgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCA
                     aattaat  putative branch site (score: 3)
                  tctaattaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taccaaagaaaaataatgatgttgaaagtttgttatggatgctgatatggatgctgatggtggtctaattaattttggtgaattgtttcatgatcatcagTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- ccaaaga
- - - - -aaaataa
- - - - - - - - -gatgttg
- - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg