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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGTGGCACCGACTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatcatcccttcaaaaaatatttcatatcaatgataacaaaaaatatttttttccctttatatcactagaaaaattaaaactagtgaagaaata...

Basic information

species Glycine max
transcript GLYMA12G08040.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234537|gb|AW569874.1|AW569874
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|254322273|gb|GR837687.1|GR837687
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|33390496|gb|CA853691.1|CA853691
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|22524086|gb|BU082897.1|BU082897
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|120533753|gb|EH261886.1|EH261886
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|9819349|gb|BE554862.1|BE554862
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|15814999|gb|BI787274.1|BI787274
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|6846982|gb|AW349272.1|AW349272
EST:     GCATGATCTTCATCCTTGTTTACTGCACCGCGGGTATTTCAG                         GAGGACACATAAACCCGNCNGTGACATTCGGGTTGTTNNNANGACGCAAGG
genomic: GCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|10709346|gb|BF009070.1|BF009070
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTANGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|21678041|gb|BQ630392.1|BQ630392
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|19453265|gb|BM954675.1|BM954675
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|19936072|gb|BQ080710.1|BQ080710
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|8402379|gb|BE058013.1|BE058013
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAAGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|19934761|gb|BQ079791.1|BQ079791
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|14126362|gb|BG790800.1|BG790800
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|21887797|gb|BQ741010.1|BQ741010
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|26047185|gb|CA784056.1|CA784056
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|7478573|gb|AW666319.1|AW666319
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|19937757|gb|BQ081409.1|BQ081409
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|18734066|gb|BM527966.1|BM527966
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|9564212|gb|BE473721.1|BE473721
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|254319408|gb|GR830648.1|GR830648
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|6455436|gb|AW186119.1|AW186119
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTANGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|4303282|gb|AI443454.1|AI443454
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|9901148|gb|BE610116.1|BE610116
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|14008891|gb|BG725495.1|BG725495
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGTCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTACGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|33390628|gb|CA853823.1|CA853823
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|15662042|gb|BI699413.1|BI699413
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|192294608|gb|FG986457.1|FG986457
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|16346636|gb|BI972231.1|BI972231
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|254340906|gb|GR854634.1|GR854634
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|151403119|gb|EV272929.1|EV272929
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|9820702|gb|BE556212.1|BE556212
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|9564958|gb|BE474467.1|BE474467
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|21677285|gb|BQ629636.1|BQ629636
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATNAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|31561187|gb|CD487025.1|CD487025
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: gi|10845184|gb|BF068345.1|BF068345
EST:     CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG                         GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGGTGGCACCGACTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatcatcccttcaaaaaatatttcatatcaatgataacaaaaaatatttttttccctttatatcactagaaaaattaaaactagtgaagaaata

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa