1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaccatactattctactagttagaaggtaagatgttgaacgtgtattatatatgcatgcaagaagaaaatataattttgtggacttggtgtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTGGCACAGTGTGCCGGTGC
species | Glycine max |
transcript | GLYMA12G08040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|254322273|gb|GR837687.1|GR837687
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|33390496|gb|CA853691.1|CA853691
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|22524086|gb|BU082897.1|BU082897
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|120533753|gb|EH261886.1|EH261886
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|9819349|gb|BE554862.1|BE554862
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|15814999|gb|BI787274.1|BI787274
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|6846982|gb|AW349272.1|AW349272
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: GCATGATCTTCATCCTTGTTTACTGCACCGCGGGTATTTCAG GAGGACACATAAACCCGNCNGTGACATTCGGGTTGTTNNNANGACGCAAGGEST: gi|10709346|gb|BF009070.1|BF009070
genomic: GCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTANGACGCAAGGEST: gi|21678041|gb|BQ630392.1|BQ630392
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|19453265|gb|BM954675.1|BM954675
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|19936072|gb|BQ080710.1|BQ080710
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|8402379|gb|BE058013.1|BE058013
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAAGACGCAAGGEST: gi|19934761|gb|BQ079791.1|BQ079791
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|14126362|gb|BG790800.1|BG790800
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|21887797|gb|BQ741010.1|BQ741010
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|26047185|gb|CA784056.1|CA784056
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|7478573|gb|AW666319.1|AW666319
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|19937757|gb|BQ081409.1|BQ081409
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|18734066|gb|BM527966.1|BM527966
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|9564212|gb|BE473721.1|BE473721
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|254319408|gb|GR830648.1|GR830648
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|6455436|gb|AW186119.1|AW186119
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTANGACGCAAGGEST: gi|4303282|gb|AI443454.1|AI443454
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|9901148|gb|BE610116.1|BE610116
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|14008891|gb|BG725495.1|BG725495
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGTCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTACGACGCAAGGEST: gi|33390628|gb|CA853823.1|CA853823
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|15662042|gb|BI699413.1|BI699413
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|192294608|gb|FG986457.1|FG986457
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|16346636|gb|BI972231.1|BI972231
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|254340906|gb|GR854634.1|GR854634
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|151403119|gb|EV272929.1|EV272929
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|9820702|gb|BE556212.1|BE556212
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|9564958|gb|BE474467.1|BE474467
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGGEST: gi|21677285|gb|BQ629636.1|BQ629636
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATNAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|31561187|gb|CD487025.1|CD487025
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGEST: gi|10845184|gb|BF068345.1|BF068345
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAG GAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGgtatcacatc ... gtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGG
attatatatgcatgcaagaagaaaatataattttgtggacttggtgtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTGGCACAGTGTGCCGGTGC
aagaagaaaatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaccatactattctactagttagaaggtaagatgttgaacgtgtattatatatgcatgcaagaagaaaatataattttgtggacttggtgtcgttgtagGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTGGCACAGTGTGCCGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
acaccat
- - - - - - - - - - - - - - - -gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg