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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagtttctataataattttctatcattattaattcattataaatatcacctcttctatgcatctcttttctaatttatctctttgccttatgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAG

Basic information

species Glycine max
transcript GLYMA12G08040.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820111|gb|BE555621.1|BE555621
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|14125914|gb|BG790352.1|BG790352
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|254322273|gb|GR837687.1|GR837687
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGGTTCACTTGGC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGG-TTCACTTGGC
EST: gi|22525415|gb|BU084226.1|BU084226
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|22521782|gb|BU080603.1|BU080603
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9820659|gb|BE556169.1|BE556169
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888263|gb|BQ741476.1|BQ741476
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888578|gb|BQ741791.1|BQ741791
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|120533753|gb|EH261886.1|EH261886
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|15814999|gb|BI787274.1|BI787274
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|33389744|gb|CA852951.1|CA852951
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|208136343|gb|GD940143.1|GD940143
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|6846982|gb|AW349272.1|AW349272
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|19934407|gb|BQ079437.1|BQ079437
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888959|gb|BQ742172.1|BQ742172
EST:     TTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9565767|gb|BE475276.1|BE475276
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|7590386|gb|AW706140.1|AW706140
EST:     TCTTCTCTGCCACTGACCCTAATAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9820836|gb|BE556346.1|BE556346
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9819684|gb|BE555197.1|BE555197
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21600337|gb|BQ610668.1|BQ610668
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|192301298|gb|FG988073.1|FG988073
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|8827656|gb|BE211386.1|BE211386
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|31305132|gb|CD390335.1|CD390335
EST:     GACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: GACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|281501705|gb|GT917133.1|GT917133
EST:     GACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: GACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|7588334|gb|AW704132.1|AW704132
EST:     CACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: CACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|22521708|gb|BU080519.1|BU080519
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|5820239|gb|AI988445.1|AI988445
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGGTCACTTTGGC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCAC-TTGGC
EST: gi|18734066|gb|BM527966.1|BM527966
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9564212|gb|BE473721.1|BE473721
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21256331|gb|BQ453219.1|BQ453219
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|6455436|gb|AW186119.1|AW186119
EST:     CTTCTCTGCCACTGACCCTAAGAAGAAACGCTAGG-ATTCCCATGTTCCT                         GTACTGGGCGCC
genomic: CTTCTCTGCCACTGACCCTAAGAGGAA-CGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGG-CGCC
EST: gi|20813648|gb|BQ298126.1|BQ298126
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9901148|gb|BE610116.1|BE610116
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATNTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888166|gb|BQ741379.1|BQ741379
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|33390628|gb|CA853823.1|CA853823
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGC
EST: gi|15662042|gb|BI699413.1|BI699413
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTT
EST: gi|4294793|gb|AI442241.1|AI442241
EST:     CTTCTCTGCCACTGCCCCAAAGAGGAACG-TAGGGGATTCCCATGTTCCT                         GTACTGGCGCCACTT-CTAATTGGATTTGCCGTGTTCATGGTTCACTTGGC
genomic: CTTCTCTGCCACTGACCCTAAGAGGAACGCTA-GGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCT-ATTGGATTTGCCGTGTTCATGGTTCACTTGGC
EST: gi|192294608|gb|FG986457.1|FG986457
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9819310|gb|BE554823.1|BE554823
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|15815072|gb|BI787347.1|BI787347
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|254340906|gb|GR854634.1|GR854634
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21285484|gb|BQ473355.1|BQ473355
EST:     GATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: GATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888262|gb|BQ741475.1|BQ741475
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|22524385|gb|BU083196.1|BU083196
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|151403119|gb|EV272929.1|EV272929
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|208266277|gb|GE065466.1|GE065466
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|9564958|gb|BE474467.1|BE474467
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888233|gb|BQ741446.1|BQ741446
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|21888638|gb|BQ741851.1|BQ741851
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACTTTTTTGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|17401313|gb|BM178095.1|BM178095
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCT                         GTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
EST: gi|13311979|gb|BG405630.1|BG405630
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCT                         GTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTgtaagcatac ... atgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacctcttctatgcatctcttttctaatttatctctttgccttatgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAG
                       ttctaat  putative branch site (score: 2)
                                 tctctttgccttat  putative PPT
                   tcttttctaatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atagtttctataataattttctatcattattaattcattataaatatcacctcttctatgcatctcttttctaatttatctctttgccttatgcaaaaagGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -cctcttc