1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgacatgtttgaattgagtaatgtcttatgctgacttgtgcagtgtcaagattctgtctaattactggaaattggtttgattttggtctatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACGGCTGACGCATGAAGATGATATTTGTTTCTTAAAATACATTCA
species | Glycine max |
transcript | GLYMA11G37040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATG GGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGEST: gi|21676182|gb|BQ628533.1|BQ628533
genomic: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATGgtaagcctca ... tatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTG
EST: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATG GGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGEST: gi|209712172|gb|BW681378.1|BW681378
genomic: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATGgtaagcctca ... tatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTG
EST: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATG GGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTG
genomic: AAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATGgtaagcctca ... tatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTG
tgtcaagattctgtctaattactggaaattggtttgattttggtctatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACGGCTGACGCATGAAGATGATATTTGTTTCTTAAAATACATTCA
tttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgacatgtttgaattgagtaatgtcttatgctgacttgtgcagtgtcaagattctgtctaattactggaaattggtttgattttggtctatgttgcagGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACGGCTGACGCATGAAGATGATATTTGTTTCTTAAAATACATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- tgacatg
- - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - tgtgcag
- - - - - - - - - - - - - - - - - - - - - - -tgtcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg