1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGAGAATAACCGAGATGATTCGGAGCGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttactatttcatttcctttgaacgtagattgtttcagttgtaatctctgcaaattctaattgaaattccctttcttaacag
species | Glycine max |
transcript | GLYMA11G37040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACNNNNN NNNNNNNCAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATCEST: gi|192299837|gb|FG990074.1|FG990074
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
EST: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACNNNNN NNNNNNNCAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATCEST: gi|193325808|gb|FK290247.1|FK290247
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
EST: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAA- GAAAAA-CAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGAATAACCGAGATGATTCGGAGCGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttactatttcatttcctttgaacgtagattgtttcagttgtaatctctgcaaattctaattgaaattccctttcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC