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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttactatttcatttcctttgaacgtagattgtttcagttgtaatctctgcaaattctaattgaaattccctttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATCTATTCTAGAATGCTATCACCAAAACGCTGTGCTTCCTTCGGGTGTTATC

Basic information

species Glycine max
transcript GLYMA11G37040.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712171|gb|BW681377.1|BW681377
EST:     AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACNNNNN                         NNNNNNNCAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
EST: gi|192299837|gb|FG990074.1|FG990074
EST:     AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACNNNNN                         NNNNNNNCAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
EST: gi|193325808|gb|FK290247.1|FK290247
EST:     AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAA-                         GAAAAA-CAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC
genomic: AAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAgtattttact ... ttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtttcagttgtaatctctgcaaattctaattgaaattccctttcttaacagGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATCTATTCTAGAATGCTATCACCAAAACGCTGTGCTTCCTTCGGGTGTTATC
                           ttctaat  putative branch site (score: 2)
                                       ttccctttcttaac  putative PPT
                        aaattctaattgaaat  TA-rich tract