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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaaatttgtattgagacgcacatgccatcttaaatcctactttcatgggttcgatagagttttctcatt...

Basic information

species Glycine max
transcript GLYMA11G12280.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 9
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaaatttgtattgagacgca--catgccatcttaa-atcctactttcatgggttcgatagagttttctcatt
|| || || |||||||| || ||||| || ||||| || ||||| ||||| || |||||||| ||| | || ||||||| |||||||||||||||||| ||||||  |  | | | | | | |  |     |  ||        ||    |  | |       ||   | |  | |      ||| | |   | | |   || 
TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCATGTTTGCGgtatgtta--tcttctaccctgctatgtgactggataatcccaaaggtctaaccttattgatgtattgttcagcgtaagactgtttgttgttgatgttgtat-

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 9
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctag-acttaaatttgtattgagacgcacatgccatcttaaatcctactttcatgggttcgatagagttttctcatt---
|| || || |||||||| || ||||| |||||||| || ||||| ||||| || || ||||| ||| | |||||||||| |||||||||||| |||||||||| |      |||||   || | |||  | ||    ||      |     |     || |||||  |  || || || ||||  |  |  | |    |||   
TCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGACATACATGATTGCTCAAGTTTGTGgtaggttttaaatgcc---ttactctaatatttccccttagtccaatgtttattgtgcaccttaatacaaacctt-attggttgtactgtatatcagtattcta

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 8
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaaatttgtattgagacgcacatgccatcttaaatcctactttcatgggt-tcgatagagttttctcatt
|| || || |||||||| || ||||| |||||||| || ||||| ||||| || || ||||| ||| | ||  ||||||  ||||||||||| |||||||||| |    ||||          |  | | ||  | |       |     |     || |||||     || ||| ||| | |  ||  | | |  |  | 
TCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttc-ttatatgcatcactgtaatatttctactcagtgcaacgtttattgtgcaccttaatagaaaccttcttggttgtacatgtactgtatttgtg

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 10
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaa--atttgtattgagacgcacat--gccat----cttaaat-cctactttcatgggttcgatagagttttctcatt
||||| |||||||| ||||||||||| |||||||| || ||||| || ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||  || || ||  |   |  | || |||  | || | || | | ||| ||  || |      ||||||  |||  |  |||||| | ||  ||   ||     
TCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCATGTTTGTGgtatgcat-ttgtgacaaatccag--aaacctaaccagttttgttcacatgcaaatttgctagaacgtttaaatatctagatagatgggtac-atgtaggcatc-----

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaaatttgtattgagacgcacatgccatcttaaatcc-tactttcatgggttcgatagagttttctcatt------------------------------------------------------------------
|| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||||||||||||||||||||||||||||||| |  ||||  |  || |    |     |  |||| | | ||| |  |  |  ||  |   ||| || ||  ||   |||  |   ||  |  ||||                                                                  
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtat-ttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctat---ttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag