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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggatgtgcctttatctttgtaagtcattaggctgcattttgtaggattgcttagttctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT

Basic information

species Glycine max
transcript GLYMA11G12280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 3'ss of exon 5
----------gtaagtggatgtgcctttatctttgtaagtcattag--gctgcattttgtaggattgcttagttctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
           |   |   | |  || | ||| | |   ||  ||    ||  | ||| |     ||  ||| |    |||||      | |||||  || ||||||||||||||||||||||||   ||  |||| ||||||||| |  | ||||| ||| ||||||| ||| | ||||| |||||| |||| ||||||
actttgaaactttcctctctctctctctctctctctctctccatatttccttaactttatctatctgactagattctaatttccgtgaaatattttgtagATATACTGACATGCATGCTGACTACGTGGGAAAAGGTTTTGATCAGTTAATGGATGTCATTGACAAGATCAAGAATAATCCCGATGATAGAAGAATCATT

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G139880_T01 (Zea mays), 3'ss of exon 6
gtaagtggatgtgcctttatctttgtaagtcattaggctgcattttgtaggattgcttagttctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
    ||     | | ||  | |   | ||   | |   |   | ||||     || ||  |  |  | ||  |||    || | |||| |||||||||||||||||||||||  | ||  |||| |||||||||||  | ||||| ||| ||||||| ||| ||||||||||||| ||  | || |||
----gtaagcttacattcctttccttgagctgt-atcttttttcttgttca--tgttttctgataaagttgacat----atctgacagATATACTGACATGCATGCTGACTATACTGGAAAAGGCTTTGATCAGCTAATGGATGTGATTGACAAGATTAAGAACAATCCTGATGACCGCCGAATAATT

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtggatgtgcctttatctttgtaagtcattaggctgcattttgtaggattgcttagttctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
|| |||   | | |  |     |  |   |  ||   ||   ||  |  |||||  ||        |  |||        ||||||||||| || || ||||||||||| ||  | || |||||||||||||| ||| ||||||| ||| |||| || ||| ||||||||||||||||  | || || 
gtcagtaacttttcaatgcatatgttggttttttcttctctgttccgatggatttgttttggtgaaacatctttctcttgttttacagGTACACAGATATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTTGTAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTATTATA

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G34570.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtggatgtgcctttatct-ttgtaagtcattaggctgcattttgtaggattgcttagttctg---tatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
|| ||| | |   |  |||||| |||  | |   |  | |           |||| ||  ||   |   | ||  |||||| |  | |||||||| || || ||||||||||| ||  | |||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||| |||| || 
gtcagtagcttctctcttatctcttgacactttctgagttttggcaaaacagatttctgtgtcgagacattttgttcatct-ctctctacagGTACACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATA

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 8
--------------------gtaagtggatgtgc----ctttatctttgt-aagtcattaggctgcatttt----gtaggattgctt-agttctg---tatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
                    | ||||  |||||     || ||| ||| |  ||| |  |  |||  || |    ||||  || ||  |||| |    |||| ||||  || ||||||||| |||| ||||||||||||||||||  | |||||||||||||||||| | |||||||||||||||||||| ||| | |||||  |||||||| |||| || 
gttcgtggattttattctttgaaagtttatgtggtggactctatttttctcgagtaaggattctgttttctcgaggtagtttttctccagttttaacctattgctca--tatattttacagCTATATTGACATGCATGCTGACTATACTGGCCAAGGATTTGATCAGTTGTTAGATGTTATTAACAAGATCAAGAATAATCCGAATGATCGACGGATTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggctgcattttgtaggattgcttagttctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCACAATCCTGATGATCGAAGGATCATT
                                           tacatttta  TA-rich tract