Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag

Basic information

species Glycine max
transcript GLYMA11G12280.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 8
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaaga------actctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag--
||| ||| | |||||||| ||| |  | || || || ||||| |||||||| || ||||| |||  |||||| ||||| || ||||||||||||||||||||  | |    |   |   ||| | ||   || |      | |   | | |  ||  || ||  || |  ||||  | | ||    | |  | |  ||||   
GATCAAGAATAATCCTGACGATAGGCGAATTATCCTATCTGCGTGGAATCCTTCAGATCTCAAGAAGATGGCCCTTCCTCCTTGCCACATGTTTGCACAAgttagta-tagtgcctctattttttttaacaaaatttgagaataattgtcttgctattggaacctttt--acttgatataatacaatataatataatgcatcc

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 8
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaact---ctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag---------------------------------------------------------------------------------
||| ||| |  ||||||| || ||  | || ||| | || || |||||||| || ||||| |||  |||||| ||||| || ||||||||||||||||||||| | |   || | |  | ||   ||  |  ||| |    | |||||  ||  | || |   || ||||       ||   |||||| ||  |                                                                                     
GATCAAGAATGATCCTGACGACCGTCGAATAATTTTGTCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgtcagta-taatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccag

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 7
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgca-----gctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttga----cttccttttattgttttttttttcctgcag
||| ||| ||||||||||||| ||  | || ||| | || || |||||||| || ||||| |||  |||||| ||||| || ||||||||||||||||||||  | |       | |  ||| |||    | |     |||| |    |  | |  |||  |||   ||     | ||||| || |  |   || |  ||    
GATTAAGAACAATCCTGATGACCGCCGAATAATTTTATCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgttagtataatttttctgcttgagttaaggtctaagttaactattggctcattt--tgacttttccatggtgtgcatccttgtactaatgcattctaacttt--

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 8
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag
 || ||| ||||||||||||||||  | || ||  | || ||||||||||| |||||||||||| ||||||||||||| || ||||| ||||||||||||||    |     | ||    ||||         || ||| || || |||| |  |||    ||||       ||| | ||||||||||  |||||
AATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATATGTTTGCACAAgt----aatgccactttatcttct---------aattctgttgtt-tctcctacaatgagtttga-------ttactttttttttttttttgcag

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcag
||| ||| | |||||  |||||||| |||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||  | |   |  |   || || | | |      | |  |||| ||  | |||     |  |||| | | ||||      ||||| ||| |||||
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttagtattaaagt---ggcttatttat------atttcctttatcatttatg-----tctttgattacatttttc---ctttttcttcttgcag

upper sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctca-tgaaattttgttgacttccttttattgttttttttttcctgcag
||| ||| | || ||||||||  |  | || || |||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||  | | | ||  |     ||||||||   |    | || |  | |  |  |   |   ||     || ||| | |   | ||| |    |||||
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaac-atgct---aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag