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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA

Basic information

species Glycine max
transcript GLYMA11G12280.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G005990_T01 (Zea mays), 3'ss of exon 8
------------------------------------------------------------------------gtccgcagctatatt-----tgggtttctctttggaagaactctctttttctctcatgaaattttgttgact-----tccttttatt-gttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA
                                                                        |  |  |  | | ||     |   | | | |||   |   ||  | |||| | |       ||||||  |||        ||  |||     | |    | | ||||||||||| | ||||||||||||||| || || |||||||| || ||||| |||||||| || ||||| ||||| || || ||||| ||| | |||||||
gtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccagTTCTATGTGGAAAATGGGGAGCTATCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGA

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
gtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA
              |   |   || | |     || ||| || || |||| |  |||    ||||       ||| | ||||||||||  ||||||| ||||| ||| | ||||| || |||||||||||||||||||| || || || |||||||| ||||| || ||||| ||||| |||||  | || || |
-------------gtaatgccactttatcttctaattctgttgtt-tctcctacaatgagtttga-------ttactttttttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 9
gtccgcagcta-tatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA
       | || ||||   ||  ||  ||      | |  |||| ||  | |||     |  |||| | | ||||      ||||| ||| ||||||||||||||    |||||||| ||||||| |||||||| ||||||||||| |||||||| || ||||| || ||||| |||||||||||||||||| | |
-------gttagtattaaagtggcttattta---tatttcctttatcatttatg-----tctttgattacattttt---cctttttcttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAA

upper sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
gtccgcagctatatttgggtttctctttggaagaactctctttttctctca-tgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA
||  | | | ||  |     ||||||||   |    | || |  | |  |  |   |   ||     || ||| | |   | ||| |    ||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||
gtttggaac-atgct---aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA
                   tgttgac  putative branch site (score: 3)
                ttttgttgacttcctt  CT-rich tract
                          ttccttttattgtttt  TA-rich tract