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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtatacttttcatgcctataaaaatgttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcag

Basic information

species Glycine max
transcript GLYMA10G08500.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 3
ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtat--acttttcatgcctataaaaatgttttggaaagg--ctgttaggg--gcctacaatttatccattgtattgt----gacttttcag---------
 ||||||    |  | |||  | | |||||||||||||||||||||||||| || |||||||| || | ||| || || ||||||||||  |   || |     | | ||| |   |   | |    |||| |||   ||| |      ||| |||   ||     || | |||           
GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGgtatgtatccttaaaattgacacaaaggcccttatatgatcttgtttgggttacctgctgcacttccgttgctatgctttggaatcttccttagccaatt

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtatacttttcatgcctataaaaat--gttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcag
 || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||  | ||||      || | | |   | ||| ||    |||      |||| |  |||  |      |||| | | |  ||
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaattaatgtct----cctaaaggttaagc------ttgtaaatatgtag

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtatacttttcatgcctataaaaatgttttggaaaggctgttaggggccta-caatttatccattgtat-tgtgacttttcag
 || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||  | ||||      || | | |   |    ||     || |   |||| |  |||| |   |  || |||          
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatctttaaattaatttgtctcctaacggtttagcttgtaaatatgtag--------