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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaattttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt...

Basic information

species Glycine max
transcript GLYMA10G08500.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaattttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt
| |  || || || |  ||||| ||||  ||||||||||||||||| ||||| || |||||||| ||||| || || ||||| |||||  | || |||||||        |||| |||    | |  || |  ||  ||  |     | ||    ||    | |||| |    |  |  ||| ||||| |          
TGTTCATTAACCTTCAAACTGAGAAAGCTTACTGTCTTCCTGATGGATATGAGATAAATGATCCATCATTGGAAGATATTCGACATGTTCTCAACCCAAGgt------gcttttctatcgtcgcccatgttaactctagtaatgagctcagagctatg---cagttttttgattggtgtgct-ttggcag----------

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaatt-----ttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt
| |  || ||||| |  ||||| || |  ||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||  | ||||||||||    ||  ||  ||   | |  | || | ||       || ||      ||| |||||| |     | | |||   |  |   || ||  |||| |       
TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtg---cttcttcattgcttctaacattacatttcaatagcacttgatggctttggcaacacag----gctgcta-attagtgtactgtt--ctggcag------

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22350.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaattttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt-
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || ||||||||||| ||||| ||||| |||||||  ||    | || |   ||        | |  | |  ||    |||| |  |   |||| ||    | ||  | |  ||   | | |   |||||    
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgacta-actacatcatagttcttactgcattttgggtattgatttgtgaacatgtgagcctttgcacgtagttaacaacaacaaa

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaattttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt-
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || ||||||||||| ||||| ||||| |||||||  ||    | || |   ||        | |  | |  ||    |||| |  |   |||| ||    | ||  | |  ||   | | |   |||||    
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgacta-actacatcatagttcttactgcattttgggtattgatttgtgaacatgtgagcctttgcacgtagttaaaaacaacaaa

upper sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22285.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaattttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt--
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || ||||||||||| ||||| ||||| |||||||  ||    | || |   ||   |||     |    |    ||||| |    |   |||| ||    | ||  | |  ||   | | |   |||||     
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgactactacttcatagttcttactgcattttgtgt--attgatttgtgaacatgtgagcctttgcacgtagttaacaacaacaaaa