Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttttcatgcctataaaaatgttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCCTAATGAGAGTTACCCCCTTGAGAAATTTTTTTCTTATCCCTGAAA

Basic information

species Glycine max
transcript GLYMA10G08500.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 3'ss of exon 3
----gtatacttttcat-gcctataaaaatgt---------tttggaaaggctgttaggggcctacaatt-tatccattgtattgtg----acttttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCCTAATGAGAGTTACCCCCTTGAGAAATTTTTTTCTTATCCCTGAAA
    | | | ||   || ||   | || || |         | ||    | |  |||    ||||      ||  || |    | ||    | ||| ||||| || || || || ||||||||||| |||||||||||||| ||||| || ||  |||||||| |||| || || |||||||| ||||| ||||||||||
cattgcagatttcctattgcacctcaatatttgcaattctctctgctttgaccattattatcctatggcagtagtcacttctctatgcttaaatttgcagGTTGGTCTAAACAACATCAAGGAGACAGATTTTGTGAATGTCACAATACAGTCATTAATGAGAATTACTCCTTTAAGAAATTTCTTTCTCATCCCTGAAA

upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G091151_T01 (Zea mays), 3'ss of exon 3
-----------gtatacttttcatgcctataaaaatg--------ttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCCTAATGAGAGTTACCCCCTTGAGAAATTTTTTTCTTATCCCTGAAA
            |||||||||  | |  ||   |||         || |    | ||| |   |    |  |  | ||| ||  |        | | |||||||| ||||| || |||||||||||||||||||||||||| ||||| || ||  ||||||||||||| ||  |||||||||| ||||| ||||||||||
taatctcaaaaatatacttttattacacatggtaattaggtctttttctattgatgctttattgcctttttatctcatctataattgctgctttgtgcagGTGGGTCTTAACAACATCAAGGAGACTGATTTTGTGAATGTCACAATACAGTCATTAATGAGAGTTACACCTCTGAGAAATTTCTTTCTAATCCCTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCCTAATGAGAGTTACCCCCTTGAGAAATTTTTTTCTTATCCCTGAAA
                                               cttttc  CT-rich tract
                       tacaatttat  TA-rich tract