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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctctgttctctttatgttgttgttaccttgaattctttaaatgattaactactaatatgcattatctaagttcattcatatggttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG

Basic information

species Glycine max
transcript GLYMA10G08500.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G091151_T01 (Zea mays), 3'ss of exon 2
attctctgttctctttatgttgttgttaccttgaattctttaaatgattaactactaatatgcattatctaagttcattcatatggttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG
       || ||  ||   |  || | || ||  |||     |    || |   ||  |  |||  |   | | |  |   ||  ||  | |    |||| ||||||    |  | |||  | | |||||||||||||||||||||||||| || |||||||| || | ||| || || ||||||
-------gtgcttcttcattgcttctaacattacatttcaatagcacttgatggct--ttggcaacac--aggctgctaattagtgtactgttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATG

upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22350.2 (Arabidopsis thaliana), 3'ss of exon 2
attctctgttctctttatgttgttgttaccttgaattctttaaatgattaactactaatatgcattatctaagttcattcatatg-gttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG
      |    |    || ||  | ||   |    || | | |||  ||   |  |  |     |  | |   |  |  | |  | | |||| || | ||| || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| ||||||
-catgatagcttgaacatattactcttctttcatgttttgtcaatttttctttgatttttcagttcctttgtatgaaggcttcggtgctatccatttacagGTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATG

upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22410.1 (Arabidopsis thaliana), 3'ss of exon 1
attctctgt-tctctttatgttgttgttaccttgaattctttaaatgattaactactaatatgcattatctaagttcattcatatg-gttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG
  | | | | | | || || ||  | ||   |    || | | |||  ||   |  |  |     |  | |   |  |  | |  | | |||| || | ||| || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| ||||||
--tatttatattttttcatattactcttctttcatgttttctcaatttttctttgatttttcagttcctttttatgaaggcttcggtgctatccatttacagGTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATG

upper sequence: GLYMA10G08500.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22285.1 (Arabidopsis thaliana), 3'ss of exon 3
attctctgttctctttatgttgttgttaccttgaattctttaaatgattaactactaatatgcattatctaagttcattcatatg-gttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG
  |   |    |    || ||  | ||   |    |  | | ||   ||   |  |  ||    |  | |   |  |  | |  | |||||| || | ||| || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| ||||||
-cttgatagcttgaacatattactcttctttcatgtcttgtcaaattttctttgattttacagttcctttttatgaaggcttcggtgttatccatttacagGTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaactactaatatgcattatctaagttcattcatatggttatctatctgcagATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATG
       tactaat  putative branch site (score: 1)
                                            tctatct  putative PPT
       tactaatat  TA-rich tract