1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagtgagatgtgtagatcatagaacattatatgaactaacatctttttttcctgtatttctctggtcttttctgatatcctttttaatgtgtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCTATGGCTTCTTCCTTTGGGCTGCATGGCC
species | Glycine max |
transcript | GLYMA08G44580.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAA GGACATCACCACAACATCCCCGAGCTTTGTATTCCATTCACAAGTAGACGAEST: gi|6454298|gb|AW184981.1|AW184981
genomic: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAAgtaattcttt ... gtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
EST: TGACCCTTCAATATCTCAA GGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGAEST: gi|213597200|gb|DB981592.1|DB981592
genomic: TGACCCTTCAATATCTCAAgtaattcttt ... gtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
EST: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAA GGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGAEST: gi|209710674|gb|BW671020.1|BW671020
genomic: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAAgtaattcttt ... gtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
EST: GTTTTGCGCCATCCGTCACTTTTGAAGAACA---CCCTTCAATATCTCAA GGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGAEST: gi|7234008|gb|AW569349.1|AW569349
genomic: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAAgtaattcttt ... gtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
EST: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAA GGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
genomic: GTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATATCTCAAgtaattcttt ... gtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGA
tttttcctgtatttctctggtcttttctgatatcctttttaatgtgtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCTATGGCTTCTTCCTTTGGGCTGCATGGCC
ttttaat putative branch site (score: 3)
atatcctttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgagatgtgtagatcatagaacattatatgaactaacatctttttttcctgtatttctctggtcttttctgatatcctttttaatgtgtacgagcagGGACATCACCACAACATTCCCGAGCTTTGTATTCCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCTATGGCTTCTTCCTTTGGGCTGCATGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA