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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgttttgctggattatgttgcctctaatacggttgttaggaaataaatatgtaatatttgtgctaaagatagctatttattttgcttgtatatgcagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG

Basic information

species Glycine max
transcript GLYMA08G44580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 3'ss of exon 2
-------------------------------gtttgttttgctggattatgttgcctctaatacggt-tgttaggaaataaatatgtaatatttgtgctaaagatagctatttattttgcttgtat-atgcagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG
                                   ||  | ||   |  | |||   || |  | || |  | ||    |  |   |  | | |||| |   | | |  ||||  |   ||||| |  ||||||||| || || ||  | || || || |||||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||
gtaagtccgccgcattcgccattggttggggcgccgtactcctccttccttttgttgctgagcctgtctcattgggggaatttgactggtgtgtgtggttgggttgg--attttgtggccttgtgttgtgcagTCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATAAGCAGTGCTGTGATTGATGACGGGCTGATTAACAAG

upper sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G007555_T01 (Zea mays), 3'ss of exon 2
--------------gtttgttttgctggattatgttgcctctaatacggttgtt--aggaaataaata------tgtaatatttgtgctaaagatagct--atttattttgcttgtatatg---------cagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG
               ||  | |  ||||    || | | | |   |||   |    | ||| | |||       ||     | |  | |   | | |||   |    ||||| |||   ||         ||||||| || || ||  | || || || |||||||| ||||| ||||| ||||||||||| || || |||||| |||||||||||
gtaagcatgatctgcttcctctccctggtcgctgcttcatttcgcacgcacggggaatgaattgaattgacgcctgcgccttgttcggtctgggtggctgagtgggctttgcctgtgcttgttgttcctgcagTCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAG

upper sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 1
--gtttgttttgctggattatgttgcctctaatacggttgttaggaaataaatatgtaatatttgtgctaaagatagctatttattttgcttgtatatgcagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG
   ||  |       | | ||  |     |  | |      |   ||  ||  ||  ||   |||| || ||||| |  |||| |||  |||    || |||| |||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||  |||| ||||||
tcattcctacctaatgctaatagtttgctttctgccaactcttttaatgaaccattaaagcattgtactgaagattgtaattttttt--ctttccaatacagTTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaatatgtaatatttgtgctaaagatagctatttattttgcttgtatatgcagTCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAG
                  tgctaaa  putative branch site (score: 2)
                          atagctatttatttt  TA-rich tract