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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag

Basic information

species Glycine max
transcript GLYMA08G44580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G173424_T02 (Zea mays), 5'ss of exon 5
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagatttt--ctgtaaatttaa-taacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|||||||||||||| |||| ||| ||  |||| |||||||| ||||||||||||||||| || || ||||||||||| ||| ||||||| || || || |||  | |      | || |||     |||  || ||| ||   ||  | |      ||||| ||| | | | | ||  |||  |  |    ||| |||  |                                                        
TTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctcccgtgttttgttttgtagattgataatttggctctcaactctaaatgttaaatctaagttatattacatcattacatgcttagctt-aatggt--------------------------------------------------------

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|||||||| ||||||||||||||||| || || |||||||| |||||||| || ||||| || || ||||| ||||| ||| | ||||| |||||||| |||| ||| |   ||| ||     |              |   |||| || | ||   |||  | || || |||       ||          |  ||   |||||      |  | || || |                               
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtt-tgtgatacttagggcat-------------gtgcacagtttgtttg---attccaaaataaggcatgtacataacgg------cagattatgttgatg--tggtcaagatgaatagt-----------------------------

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 5
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|| ||||||||||| |||||||| ||  | || |||||||| ||||||||||||||||| || || ||||||||||| ||| ||||||| || || || |||  | | |      | |||| ||  |||  || ||| || | ||      || ||||| | | | | | |  |   ||| || |      ||||     | |  | ||||                                           
TTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGACTgtgagctct----cgtgttttgta-gattggtactttggctttcaa-----ctataaatgttaaatctaagttct-ctgacatgattagcctaataacagtagg-agcctta------------------------------------------

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcata-cagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|| ||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||||||| || || || ||||| || || ||||| || ||  | |||| ||          || |    |||  |  |  || | ||| || |||     || ||   ||     ||||                                                                                 
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactatttttttgcag--------------------------------------------------------------------------------

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaata-acaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| || || ||||| ||||| ||||| || || ||||| || |||| ||  |   || ||         ||             || | | ||| | | |  || | |  | |     ||   |    |  ||  |||   |    |  ||| || ||    |                                   
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctt-tgatcttacaaagttgatctgagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag----------------------------------

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 4
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcatacagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttga-taacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag
|| ||||||||||| || || || ||||| || ||||| ||||||||||||||||| || ||||| || || || || || || || || ||||| || |||||||| |   | ||  ||  |  ||||||     ||   |     || | ||||  | |   |||| ||     |||   |  |   |||||  |  | |||  || |                                             
TTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctttcaaatgcttgattaaattatccacataatgt----gttctttgtacctctttcaacagtg----gttgtggttca--ttttaacataatatgaacaaac---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597200|gb|DB981592.1|DB981592
EST:     TGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAAT                         TTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAG
genomic: TGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgta ... catgtttcagTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAG
EST: gi|209710674|gb|BW671020.1|BW671020
EST:     TGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAAT                         TTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAG
genomic: TGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgta ... catgtttcagTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAG