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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgtctgttttgtcattggaaaacattgtgttttgggcatattgtatttcactagttgagcctttttcatcaatgaaaagaaaatacatatctcatta...

Basic information

species Glycine max
transcript GLYMA08G44580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 3
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgtctg---ttttgtcattggaaaac-attgtgttttgggcatattgtatttcactagttgagcctttttcatcaatgaaaa-----gaaaatacatatctcatta-------------------------------
|||| || || ||  | || || || |||||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||||| || ||   |  | |  | |    || ||| ||| | |   | ||||   || | |  |||    |  || || || | |       |  ||    |||   || |                               
TCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATAAGCAGTGCTGTGATTGATGACGGGCTGATTAACAAGgttggtgtggagtcctctgttcgcgccacgattttgtatcgtaga-attgggattgattgattgg--ttgattgatgaaggcatgttattgtgaacctgtatgcaatcactgactgtgtttgtccgttgaccttgtgcag

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 3
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgtctgttttgtcattggaaaacattgtg--ttttgggca------tattgtatttcactagttgagcctttttcatcaatgaaaag-----aaaatacatatctcatta---------------------
|||| || || ||  | || || || |||||||| ||||| ||||| ||||||||||| || || |||||| |||||||||||||  ||  | |  || |||||   ||  | |   | ||  | |      ||||||  |  |     || || ||| |     |||   |       | ||| ||      ||                      
TCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAGgtcagt--gatgggtgattggtccactgtttagttcttatgtaatctcttattgttgtgtatggtatgtgcatttgtgggtgatggtcaatgcctgagatatattagctgttcttgcttgtcacctctttgcag

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 2
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgtctgttttgtcattggaaaacattgtgttttgggcatattgtatttcactagttgagcctttttcatcaatgaaaagaaaatacatatctcatta-------------------------------------------------------
| || || || ||  | || ||| | || || || ||||| ||||| ||||||||||| ||||| |||||| |||| ||||||||||||  ||  |  |    |    | || | || |   | ||    | |  |         | |  || ||  ||| | | || | |||||   |||                                                         
TTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggtgattgctgctgctttctttcttttcttctcttaggaaaatgaatacaactttcttgctttatgtatgtacacaatacacatacaccatacacatgatcgtgatgagtaatctgggttgtggcgctcttgtcctggcatcctgcag

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 4
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgtctgttttgtcattggaaaacattgtgttttgggcata-ttgtatt--tcactagttgagcctttttcatcaatgaaaagaaaatacatatctcatta------------------------
| || || ||||||||||| || ||||| ||||| || || || || ||||||||||| ||||| |||||| | || |||||||| ||   |    | |||    | |  |  | | |    |  | || || |  |||| | |   || | || | |   |     | | || | | ||| |||                         
TTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAACAAGgtatgaa-ggaagggcatcattatatgtcttttatgccactcacttatactcctcacgaatcatgcatattgc-tacgtcttttggacatccttttctgattttccttgacctgtcttgtcgttcag

upper sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 2
TCAGTGTAAGTGAAATAGAAGCACTCTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATTGACGATGGGTTGATTAACAAGgtttgt----------ctgttttgtcattggaaaacattgtgttttgggc----atattgtatttcac-tagttgagcctttttcatcaatgaaaagaaaatacatatctcatta-----------------------------------------
| |||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||  |||| |||||||||  |           | ||   |   | |  |  ||||    |  |       || || |  |||| |   | |  || ||   ||  |   |    | |   | | ||   |                                         
TTAGTGTAAGTGAAATCGAGGCACTATACGAGCTGTTTAAGAAGATCAGCAGCGCTGTGATTGATGACGGTCTGATCAACAAGgttcatagataagctattattcaatttataggcagtattggaaatctgattgtagtaatgcacctcacatgaataaatctcttgattctctcccattccatttgttgtttcccaactatagttagtaattgatgtttctacggtaccatattacag