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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATATGCGCAGGATTTCAAACCAGCATACATGGAGGGATTTGAACAGGCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccaccttctggcccaggctttactggagaggtatggtagagacctaaaaatctagaaatattcgagtttctgattctggatcaaattagtcataat...

Basic information

species Glycine max
transcript GLYMA08G20130.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193551334|gb|FK508035.1|FK508035
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|120495763|gb|EH223930.1|EH223930
EST:     GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193547952|gb|FK504785.1|FK504785
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193655631|gb|FK607099.1|FK607099
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAA-GTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193608437|gb|FK557900.1|FK557900
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193510368|gb|FK467622.1|FK467622
EST:     TGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: TGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|208156231|gb|GD953279.1|GD953279
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAA
EST: gi|193682967|gb|FK625115.1|FK625115
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCT-GTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193450041|gb|FK415591.1|FK415591
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAA
EST: gi|193402575|gb|FK368073.1|FK368073
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTAT
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTAT
EST: gi|193674706|gb|FK615586.1|FK615586
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|207685324|gb|GD668110.1|GD668110
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAA
EST: gi|193666480|gb|FK610117.1|FK610117
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|207728853|gb|GD708709.1|GD708709
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTA
EST: gi|193480862|gb|FK444301.1|FK444301
EST:     CTGAA-CTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: CT-AAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|208282589|gb|GE074611.1|GE074611
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193447031|gb|FK413702.1|FK413702
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|207697555|gb|GD679514.1|GD679514
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTA
EST: gi|193731714|gb|FK665442.1|FK665442
EST:     TGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: TGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|193727102|gb|FK656956.1|FK656956
EST:     TGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: TGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
EST: gi|207825479|gb|GD800564.1|GD800564
EST:     GCTGAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAG                         GGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA
genomic: GCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccacct ... ttttttgcagGGAAGATAGTGATAGTAATTGAGTTAGTGGGCGGCTTGTATTAAAGTACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCATATGCGCAGGATTTCAAACCAGCATACATGGAGGGATTTGAACAGGCTAAGCTGGGGAACCATCCTGCCAAAGAACAGGCAGGGTCACAACAAAGgtatccaccttctggcccaggctttactggagaggtatggtagagacctaaaaatctagaaatattcgagtttctgattctggatcaaattagtcataat

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagagg