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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatttgttcctactttcaaattccatgacccagtccagagaaaatcatttgatgtttgatttgctgcatcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAG

Basic information

species Glycine max
transcript GLYMA08G20130.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408616|gb|EV278424.1|EV278424
EST:     CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG                         GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
EST: gi|213601414|gb|DB956706.1|DB956706
EST:     CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG                         GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGT
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGT
EST: gi|151410130|gb|EV279938.1|EV279938
EST:     CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG                         GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
EST: gi|14205425|gb|BG839103.1|BG839103
EST:     CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG                         GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgacccagtccagagaaaatcatttgatgtttgatttgctgcatcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAG
                               gtttgat  putative branch site (score: 5)
                  aaaatcattt  TA-rich tract