1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttttgtttctttcttttcagaagtttggtcatgccataataagctgattgaattgaatctaattcattagtagttcaatttcaatggtttgctacccttttgattgtaagaatgtttctgaatgacattttcttgtgtgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGTATGGGAGGAATCAGGGAAGACGAGACTGGAATAAGAGTCCTGGTCAATA
species | Glycine max |
transcript | GLYMA08G20130.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAG GAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGTEST: gi|151410130|gb|EV279938.1|EV279938
genomic: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAGgtaagttttg ... tgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGT
EST: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAG GAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGTEST: gi|14205425|gb|BG839103.1|BG839103
genomic: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAGgtaagttttg ... tgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGT
EST: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAG GAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGT
genomic: CTTCGTGCTACCAGATTCCTATATTGATCCGGTGAACAAACAATATGGAGgtaagttttg ... tgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGT
tacccttttgattgtaagaatgtttctgaatgacattttcttgtgtgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGTATGGGAGGAATCAGGGAAGACGAGACTGGAATAAGAGTCCTGGTCAATA
ttttgat putative branch site (score: 4)
tgataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgtttctttcttttcagaagtttggtcatgccataataagctgattgaattgaatctaattcattagtagttcaatttcaatggtttgctacccttttgattgtaagaatgtttctgaatgacattttcttgtgtgataaatagGAGATCAGTACATTAATGGAACAATTATCCCTCGACCTCCACCAGTACAGTATGGGAGGAATCAGGGAAGACGAGACTGGAATAAGAGTCCTGGTCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA