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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAAGCCATTATAGGTGTTGGAACAGGGATTCTTGATCAACCAACCCGAGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacactttgaattcttttagctgatgtttgatgctgaaagctatgctattaatcctattttttgctatatatttccccctttttgggatcatatct...

Basic information

species Glycine max
transcript GLYMA08G20050.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193532480|gb|FK492384.1|FK492384
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATA-TTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193345637|gb|FK312530.1|FK312530
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|208206624|gb|GE004585.1|GE004585
EST:     ACAGAAATTACTTACTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: ACAG-AATT-CTT-CTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|208179402|gb|GD974077.1|GD974077
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193401818|gb|FK365931.1|FK365931
EST:     GTACAGAATTCTTCTGGTGAATCTGCAAGAAAATAATTACTCTGATAAAG                         ATAATTTTACTCAAACCATCAAA
genomic: GTACAGAATTCTTCTGGTGAATCTGCA-GAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATA-TTTT-CTCAAACCATCAAA
EST: gi|207748630|gb|GD720411.1|GD720411
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCAT
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCAT
EST: gi|193302396|gb|FK268258.1|FK268258
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193405899|gb|FK375096.1|FK375096
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTTCTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTAGGCATCATCTTTT
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGT-GGCATCATCTTTT
EST: gi|208104825|gb|GD904088.1|GD904088
EST:     GGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: GGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193370211|gb|FK338103.1|FK338103
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAA-TAATTACTCTGATAAAG                         ATATTTTCTCAAACCA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCA
EST: gi|207796719|gb|GD768445.1|GD768445
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|208110002|gb|GD906278.1|GD906278
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGG
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGG
EST: gi|208176948|gb|GD976019.1|GD976019
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193405593|gb|FK374706.1|FK374706
EST:     AATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|208332844|gb|GE131447.1|GE131447
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193607049|gb|FK556948.1|FK556948
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193580661|gb|FK534006.1|FK534006
EST:     TGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: TGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193330516|gb|FK295350.1|FK295350
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: gi|193409342|gb|FK374592.1|FK374592
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAA
EST: gi|193389166|gb|FK354877.1|FK354877
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATATTTTCTCAAACCATCAAA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAA
EST: gi|193381304|gb|FK345579.1|FK345579
EST:     AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG                         ATAATTTTACTCAAACCATCAAA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATA-TTTT-CTCAAACCATCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTCAAGCCATTATAGGTGTTGGAACAGGGATTCTTGATCAACCAACCCGAGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacactttgaattcttttagctgatgtttgatgctgaaagctatgctattaatcctattttttgctatatatttccccctttttgggatcatatct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc