1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgggaatgaaacatatttcagaagcgtttgagttacttgatgcctattgtattcttgggaattaaaccgtcactttctctcacggctttgtggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTATCTCACTTGATAATGTAAGAATGTCGCATATTCTGTGATCGGTATTATA
species | Glycine max |
transcript | GLYMA08G20050.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATA-TTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193345637|gb|FK312530.1|FK312530
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|208206624|gb|GE004585.1|GE004585
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: ACAGAAATTACTTACTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|208179402|gb|GD974077.1|GD974077
genomic: ACAG-AATT-CTT-CTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193401818|gb|FK365931.1|FK365931
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: GTACAGAATTCTTCTGGTGAATCTGCAAGAAAATAATTACTCTGATAAAG ATAATTTTACTCAAACCATCAAAEST: gi|207748630|gb|GD720411.1|GD720411
genomic: GTACAGAATTCTTCTGGTGAATCTGCA-GAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATA-TTTT-CTCAAACCATCAAA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATEST: gi|193302396|gb|FK268258.1|FK268258
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCAT
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193405899|gb|FK375096.1|FK375096
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTTCTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTAGGCATCATCTTTTEST: gi|208104825|gb|GD904088.1|GD904088
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGT-GGCATCATCTTTT
EST: GGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193370211|gb|FK338103.1|FK338103
genomic: GGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAA-TAATTACTCTGATAAAG ATATTTTCTCAAACCAEST: gi|207796719|gb|GD768445.1|GD768445
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|208110002|gb|GD906278.1|GD906278
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGEST: gi|208176948|gb|GD976019.1|GD976019
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGG
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193405593|gb|FK374706.1|FK374706
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|208332844|gb|GE131447.1|GE131447
genomic: AATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193607049|gb|FK556948.1|FK556948
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193580661|gb|FK534006.1|FK534006
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: TGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193330516|gb|FK295350.1|FK295350
genomic: TGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTAEST: gi|193409342|gb|FK374592.1|FK374592
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAEST: gi|193389166|gb|FK354877.1|FK354877
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATATTTTCTCAAACCATCAAAEST: gi|193381304|gb|FK345579.1|FK345579
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATATTTTCTCAAACCATCAAA
EST: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAG ATAATTTTACTCAAACCATCAAA
genomic: AGTACAGAATTCTTCTGGTGAATCTGCAGAAAATAATTACTCTGATAAAGgttagacact ... tggtttgcagATA-TTTT-CTCAAACCATCAAA
attgtattcttgggaattaaaccgtcactttctctcacggctttgtggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTATCTCACTTGATAATGTAAGAATGTCGCATATTCTGTGATCGGTATTATA
ctctcac putative branch site (score: 3)
aattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaatgaaacatatttcagaagcgtttgagttacttgatgcctattgtattcttgggaattaaaccgtcactttctctcacggctttgtggtttgcagATATTTTCTCAAACCATCAAAGCTTGGGTTGGATCGTGGCATCATCTTTTATCTCACTTGATAATGTAAGAATGTCGCATATTCTGTGATCGGTATTATA
- ggaatga
- - - - - - - - - - - -gcgtttg
- - - - - - - - - - - - - - - - - - -tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctttg