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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTAGCATGTGCTTTACTGAGAAGAAAATGCCGTCTAGTAACTGGGGGTACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatgagcatgccatatttttatgatatattgctaattgatttttttatctgtttaatgtctatgtgtccattagactcaactagtttacatgtt...

Basic information

species Glycine max
transcript GLYMA08G20050.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20050.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0034g02380.t01 (Vitis vinifera), 5'ss of exon 2
GCTTTAGCATGTGCTTTACTGAGAAGAAAATGCCGTCTAGTAACTGGGGGTACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatgagcatgccatatttttatgatatattgctaattgatttttttatctgtttaatgtctatgtgtccattagactcaactagtttacatgtt----
|||||||||| |||||||||||||||||||||  | || |||||||| || ||||||||||||||  ||||||||||| | ||  | ||||||||||||||||||   | |   |    | ||||||||  |   || |  ||     || | | | | |      ||  | ||  |   |   ||    || ||   ||    
GCTTTAGCATCTGCTTTACTGAGAAGAAAATGTAGGCTGGTAACTGGAGGCACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAGgtattagcttatttt----tgtttttatgcaagtgtggttgttttaccttctgtttatgtgtaagttagctatcattccaatctaatcctttcactacttgaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054240|gb|BM732907.1|BM732907
EST:     TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAG                         GTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
genomic: TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatg ... gtgcttgtagGTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
EST: gi|7588515|gb|AW704239.1|AW704239
EST:     TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGNGATTGACAG                         GTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
genomic: TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatg ... gtgcttgtagGTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
EST: gi|27426539|gb|CA938059.1|CA938059
EST:     TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAG                         GTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
genomic: TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatg ... gtgcttgtagGTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
EST: gi|15812340|gb|BI784615.1|BI784615
EST:     TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAG                         GTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA
genomic: TACAGACAACCATTTAATACTTTGGGATTTAAGGCCCCTGGGATTGACAGgtattgtatg ... gtgcttgtagGTAAGTTTTATGAGAAGGTATGTGAAACATGTCATATTACTTTGAATAAAA