1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttgctgataggacattttttctcaggatttcattgatattatatagtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG
species | Glycine max |
transcript | GLYMA08G19970.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAA GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATEST: gi|208150313|gb|GD950834.1|GD950834
genomic: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAgtaagaataa ... ttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAAT
EST: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAA GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATT
genomic: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAgtaagaataa ... ttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATT
gtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG
gtttaat putative branch site (score: 4)
tttttcatttt putative PPT
tttaatattttatcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgataggacattttttctcaggatttcattgatattatatagtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG
-tgctgat