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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttctcttttctctcaatattatgtgagtaatcaagtatgttatttagacagcatgtccggtgggtttgttgctcaaaaattatttttggtaaat...

Basic information

species Glycine max
transcript GLYMA08G19970.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 10
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgt-ctgtttctcttttctctcaatattatgtgagtaatcaagtatgttatttagacagcat----gtccggtgggtttgttgc-tcaaaaattatttttggtaaat
|||| || || |||||||| |||||||| |||||||||||| | ||||| ||  | || |||| |||||| ||||||||||| || |||||  | || |||| |||||||  | | |     |||||    || |  |  | ||| |     | | |  ||     ||  ||| | ||  ||       ||   | | |  ||   
TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttccatatac-----atattgctggaatgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact-

upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 11
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttctcttt-tctctcaatattatgtgagtaatcaagtatgt-tatttagaca---gcatgtccggtgggtttgt---tgctcaaaaat---tatttttg-gtaaat---------------------------------------------------------------------
|||| ||  | |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||||||||||| || || ||||| || || |||||| | ||||||| |||||| ||  ||| ||  ||   |  ||| | ||| || | |     || |   ||  ||||||   ||   | |  |   ||    ||  |||||                                                                     
TTGGTATCTTATTTTTTCTCTTTGAATTTTATGATGATCAACTATTGGCATTCATGGTCTTAATTCTTGTCTGGTTGTGCGAGCTATTTACACTGATCAGgtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttgtatttttatataagtctcctactaatattattatacttggcatttgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575248|gb|CX548223.1|CX548223
EST:     TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAG                         TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
genomic: TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttct ... taacttgcagTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
EST: gi|7589379|gb|AW705154.1|AW705154
EST:     TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAG                         TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
genomic: TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttct ... taacttgcagTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
EST: gi|5606329|gb|AI900427.1|AI900427
EST:     TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAG                         TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTNTGCTGTA
genomic: TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttct ... taacttgcagTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
EST: gi|58023297|gb|CX710038.1|CX710038
EST:     TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAG                         TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA
genomic: TTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttct ... taacttgcagTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTA