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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGgtattcaatttcaacttcctttctttttatttagggttttgatcgcctcaatatacctcaacattgaacctactttttgggaaatgcaaaccgacttctt...

Basic information

species Glycine max
transcript GLYMA08G19970.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 1
GACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGgta---ttcaatttcaacttcctttctttttattta-gggttttgatcgcctcaatatacctcaacattgaacctactttttgggaaatgcaaaccgacttctt
 || || |   | |||| |   || ||||||   ||||| ||| | ||||| || |||||||| || |||||||||||||| |||||||| ||||| ||||||   ||  | |      |    || ||| |||||  |||  |  |     |||  | |||         || |  || |||  |  |  |  | ||      
AACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACCTCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGCAGgtaatttttgactctcgtattgaatcctttaatttataggtcgtttttagtgcaaattgcctttgttaatgacttcattgttgaaattttaagtctgaga----

upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 1
GACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGgtattcaatttcaacttcctttctt--tttatttagggtttt--gatcgcctcaatatacctcaacattgaacctactttttgggaaatgcaaaccgacttctt
|||||||| |||||||| | || | || ||  | ||||| ||  | ||||| ||  | || || ||||||||||||||||| ||||||||||| ||||||||  |   |      ||  |||  |  |||||||    |||   | |    |    | |  |     ||    | | |||  ||  | ||| |      ||   
GACTCCCAGAGTCAGAGCTTCTCTCGAATACATTTACCTCTTTGTGGCCATCACTCTCTTTTGTATTCTCGTTGTTATGCACGCCAATTACGTCCAACAGgtgcttgttggagttttttttttataatttatttgttatttatgggttttgttggaaaagtttgttgtttt-tcaaatttaaggttattgcgattgtgatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330528|gb|GR841793.1|GR841793
EST:     TAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAG                         CCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTT
genomic: TAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGgtattcaatt ... ctatgtgaagCCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTT
EST: gi|209726892|gb|BW675332.1|BW675332
EST:     TAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAG                         CCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTT
genomic: TAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGgtattcaatt ... ctatgtgaagCCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTT