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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgtactatttttctattttttggtttagttggcttaagttaatttcatttggaaataatgagttttaaatttccag

Basic information

species Glycine max
transcript GLYMA08G19970.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 11
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatg--ttcgtactatttttctattttttggtttagttggc--ttaagttaatttcatttggaaataatgagttttaaatttccag---------
|||  | ||| | ||||||||| ||||||| || ||||| || |||||||||||| |||| |||||||| || |||||||| ||  | |||||||||  | | ||    ||||   |    |   || |   |    ||    ||| || | | || ||| ||| ||  | |||||            
TGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactacatatgtctttttggtgacctatattggcaagaaactactggaatatcctatcgatata-tgacttgcatatttctgtatttatcag

upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 3
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgtactatttttctattttttggtttagttg--gcttaagtta----atttcatttggaaataatgagttttaaatttccag
||| || ||| | ||||| ||| |||||||||| |||||||| |||||||||||  |||| ||||| || || |||||||| ||| | ||||||||||  |||  |   |||| |||| ||  | |  |   | |||| | |    |  |   | |    | |||| || |   || ||||
TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTATTTTTTGGTTTTCCATATCTACTTCTTCTCATATACCTATGgtatgtgtgtatcaaacttcttttttctgactgaactattgattaactaatgacacatttctggcgctttatgacttatgctttaccag

upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 13
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgtactatttttctattttttggtttagttggcttaagttaatttcatttggaaataatgagttt-taaatttccag--
|||| | ||||||||||| ||||||||||| || || ||||| |||||||| ||| |||| ||||| || ||||||||||| ||||| ||||||| |    |    |||| |  | | || || |  ||  || |    || | ||   |     | | | |   ||| | ||||   
TGTCAGGACACCAATATCGATGAAGTTCTTCCCGCGTTTCTTCTTGCTGTACTTCTTGGTGTTCCATATTTATTTCTTCTCATATGCATATGgtaagag-atgtggttttacgttatatttgtctcattaact-actgaaactgcagacgcgttcacttactgcataactctccacag

upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S96_202V6.1 (Physcomitrella patens), 5'ss of exon 13
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgt--actatttttctattt----------tttggtttagttggcttaagttaatttcatt-tggaaataatgagttttaaatttccag----
 ||  | || ||  |||| ||| |||||||||||||||||||||| || |||||| |||  |||||||| || |||||||||||| | || ||||  ||  |  |  |  || ||||||          |||| |||  ||   |     |||||| ||| | |   |  ||    ||||| |||       
CGTGAGGACGCCCCTATCGATGCAGTTCTTTCCTCGCTTCTTTTTTCTCTATTTCATGGCTTTCCACATTTACTTCTTCTCTTATACCTACGgtaaatttctttatcagcttcctatttcacctctgtgtttgcttttcttccttagcagtaatttgattgttgctgtgctgttgcttaaagttcatctatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575248|gb|CX548223.1|CX548223
EST:     TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATG                         GTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgt ... aaatttccagGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
EST: gi|7589379|gb|AW705154.1|AW705154
EST:     TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATG                         GTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgt ... aaatttccagGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
EST: gi|5606329|gb|AI900427.1|AI900427
EST:     TNTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATG                         GTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTNTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgt ... aaatttccagGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
EST: gi|58023297|gb|CX710038.1|CX710038
EST:     TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATG                         GTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGgtatgttcgt ... aaatttccagGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTA