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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGgtaactgccccttttctggataaactaatttatataattgtccactaacaactgctttgaacttcgtcattgacatactttgaactttcagaatttaattatcgctcaaattctttttggacttcatggcag

Basic information

species Glycine max
transcript GLYMA08G19970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGgtaactgccccttttctggataaactaatttatataattgtccactaacaactgctttgaacttcgtcattgacatactttgaactttcagaatttaattatcgctcaaattctttttggacttcatggcag
|||||||||||| || ||||||||| |||||||||||||||| ||| |||| ||||| |||  ||  |||  |||||||||||         | | ||      ||  || |||    ||||||    |||  | ||||   || ||   |  ||| |||||||   |  | | ||  | | |  |    || |                  
GTGGCAGCAACTTCTTATAAACAGAGTTGTTGGATATGATACTATTATAATGAATAGCTTACAGAACTCTGCTGGTCAAGgtaggcagtaggtctttgt-----cttgttcataa---tgtccat--gcaa--gttttgctatttgtgggtctcatcctttgaagcct--gtaattcctcaactatgggtttgt------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686669|gb|AW757326.1|AW757326
EST:     TGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG                         GTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCAC
genomic: TGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGgtaactgccc ... ttcatggcagGTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCAC