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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctattattgtaatcacgtttctggtagaagctttatatatgttaattataaatttgctgacatttactttactgaaatgtaaatactatgttattaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTAC

Basic information

species Glycine max
transcript GLYMA08G19970.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 13
ttctattattgtaatcacgtttctggtagaagctttatatatgtt--aattataaatttgctgacatttactttac-tgaaatgtaaatactatgtta--ttaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTAC
    | ||||     |||    || ||  |   | | |    |||  ||||     | |||| | | ||  | |   | | ||   |||  |   ||   || |||| || || || ||| |||  |||||||||||||| || |||||||| | |||||||||||||||||||||||| || ||||| ||||| || ||  |||
----aatatttgtggcacaac-ctagtctagtttgtgtcagcgttggaatttggtttatgctaaaaattgatctctatcatatcccaatgttgcattcgtttcagGTCCCTGCTCTACAACGGTTTATGCAAAATCGACGTTCGCAACTTCAGCCACACCCAGACTTCCACATTACCTCCTCCACCATCCTTGCCTCGACTCTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208220784|gb|GE018522.1|GE018522
EST:     CACCTTATCCTGTACTTTTGGAATCGGTTTGAG                         GTACCGGCACTGCAAAGGCACATGCAAAATCGACGGTCACAACTTCAACAA
genomic: CACCTTATCCTGTACTTTTGGAATCGGTTTGAGgtaatgagtg ... tgttattaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAA
EST: gi|7589379|gb|AW705154.1|AW705154
EST:     CTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG                         GTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAA
genomic: CTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGgtaatgagtg ... tgttattaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAA
EST: gi|5606329|gb|AI900427.1|AI900427
EST:     CTGCAGCTNTTATGCAACACCTTATCCTGTACTNTTGGAATCGGNTTGAG                         GTACCGGCACTGCANAGGTACATGCAAAATCGACGGTCACAACTTCAACAA
genomic: CTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGgtaatgagtg ... tgttattaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattataaatttgctgacatttactttactgaaatgtaaatactatgttattaagGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTAC
           tgctgac  putative branch site (score: 2)
                               aaatgtaaatactatg  TA-rich tract