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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaattatattatttcttggagctagattagaccatatatgttatgctgatgaattctgattctttctagccagaatttataaaatttaagtcaatatcaattttactaaaaaaatctgctaagctttgaattttcaagtgtagAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACTAATGCAG

Basic information

species Glycine max
transcript GLYMA08G19970.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686669|gb|AW757326.1|AW757326
EST:     TCATTTGGAGACACACAATGCAGATCATCGGAAGTTTTCAGAAGCTGTGG                         AATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATC
genomic: TCATTTGGAGACACACAATGCAGATCATCGGAAGTTTTCAGAAGCTGTGGgtaagtagaa ... tcaagtgtagAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcaatatcaattttactaaaaaaatctgctaagctttgaattttcaagtgtagAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACTAATGCAG
               tactaaa  putative branch site (score: 1)
                                          ttttc  putative PPT
     atatcaattttactaa  TA-rich tract