Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctgataggacattttttctcaggatttcattgatattatatagtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG

Basic information

species Glycine max
transcript GLYMA08G19970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19970.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 3'ss of exon 7
-ttgctgataggacattttttctcag---gatttcattgatattatatagtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG
 |       | |  |||    ||||    |    || |||| |||  |  ||  | |  ||   ||||  |    || | || |     || |||    || |||||||||||||| || ||||||||| |||||||||||||||| ||| |||| ||||| |||  ||  |||  ||||||||
gtaatattcacgttattggccctcaatttggaaacagtgattttaattgctagagctgtat-ccttatgataagcttctaaaattggattacttt----ttcagGTGGCAGCAACTTCTTATAAACAGAGTTGTTGGATATGATACTATTATAATGAATAGCTTACAGAACTCTGCTGGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686669|gb|AW757326.1|AW757326
EST:     CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAA                         GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAAT
genomic: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAgtaagaataa ... ttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAAT
EST: gi|208150313|gb|GD950834.1|GD950834
EST:     CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAA                         GTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATT
genomic: CATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAgtaagaataa ... ttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgtttaatattttatcctgtatttttcaattgaatatatttttcattttagGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAG
     gtttaat  putative branch site (score: 4)
                                          tttttcatttt  putative PPT
      tttaatattttatcct  TA-rich tract